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Title: Energy barriers and rates of tautomeric transitions in DNA bases: Ab initio quantum chemical study
Authors: Basu, Soumalee
Majumdar, Rabi
Das, Gourab K
Bhattacharyya, Dhananjay
Keywords: Tautomerism;DNA;spontaneous mutation;Quantum chemistry;Transition rate;Unusual base pairing;Intrinsic reaction coordinate analysis
Issue Date: Dec-2005
Publisher: NISCAIR-CSIR, India
IPC Code: C07H21/04
Abstract: Tautomeric transitions of DNA bases are proton transfer reactions, which are important in biology. These reactions are involved in spontaneous point mutations of the genetic material. In the present study, intrinsic reaction coordinates (IRC) analyses through ab initio quantum chemical calculations have been carried out for the individual D A bases A, T, G, C and also A:T and G:C base pairs to estimate the kinetic and thermodynamic barriers using MP2/6-31G** method for tautomeric transitions. Relatively higher values of kinetic barriers (about 50-60 kcal/mol) have been observed for the single bases, indicating that tautomeric alterations of isolated single bases are quite unlikely. On the other hand, relatively lower values of the kinetic barriers (about 20-25 kcal/mol) for the DNA base pairs A:T and G:C clearly suggest that the tautomeric shifts are much more favorable in DNA base pairs than in isolated single bases. The unusual base pairing A':C, T':G, C':A or G':T in the daughter DNA molecule, resulting from a parent DNA molecule with tautomeric shifts, is found to be stable enough to result in a mutation. The transition rate constants for the single DNA bases in addition to the base pairs are also calculated by computing the free energy differences between the transition states and the reactants.
Page(s): 378-385
ISSN: 0975-0959 (Online); 0301-1208 (Print)
Appears in Collections:IJBB Vol.42(6) [December 2005]

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